I'll start with Star Trek XI.
Any Road Will Take You There by shoreleave
This is simply a perfect 'what happened at the academy' fanfic. Loads of angst, hurt/comfort, tons of friendship and even hints of slash inside. The author is amazing at portraiing McCoy and Kirk. It's a story about their growing friendship from the day they met.
Standby by
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He was glad Bones was dating again. He was. Really. But what Jim thought was good for Bones turned out to be oh, so wrong for Jim. Hurt/Comfort, friendship and slash inside. Simply love! ♥